One of the big areas to look at in brakes is actually the longer moment arm, which can be easily increased by a larger diameter disk. This is often overlooked and can been mis-interperated as a longer pedal (which is sometimes seen as a bad thing). What it actually gives you is a larger range of movement of the brakes. Some people thing stamping on the brakes and causing them to lock up means they're at optimum performance because they lock. It's far from the case. If you're coming into a bend and you want to scrub some speed off the car smoothly, you want to be able to apply a certain pressure to do that. Having the longer moment arm lets you do this.
All the calculations in the world wont replace the 'Seat of your pants' feeling though
If you can stamp on the brakes going into that hairpin and bring the car to a stop without locking the wheels or the ABS kicking in, then you know you your setup is sound.
In all honesty, the difference between the S2000 setup being bolted on as a direct replacement to the EK9 will show very little difference due to the smaller piston being used on the same pad area over a larger disk, as the differences will pretty much cancel each other out.
Going to a larger piston count (with larger overall piston area and larger braking force) on the same sized disk will give you a more noticable difference.
Having that setup with a larger diameter disk will again have a noticable difference.
What you really need is some side-by-side testing done, with all other areas being equal (same brand/style disks, same compound pads etc) on the same stretch of tarmac