More than likely your clutch release bearing. Gearbox out job to replace. Only get a genuine honda release bearing the rest seem to get noisy not long after been installed.
I had the same problme too. Thought it was cluth bearing but wasnt!. It was the gear box bearings had to get them reconditioned. Starting from first gear give the car a gradual change threw gears if the noise gets louder threw gears then its defos the gear bearings.